SE0220043

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4560
  • Arabidopsis lyrata
  • SE0220043
  • Mutator
  • M2
  • scaffold_4:3867231-3867717
  • AAAAAATAA
  • GGGCTGCATGTAGCAATCAACCTGTAATATATGCACTCAACTAGGATCACTCTGTACTTTCGACCTCTACCCAATTCTCTTCTTCCTAATTCCACCTAAACTATAAAATTCTATTCAATTAATCTCTGAAATTGCGATTTAAAACCAATAATTCACATTCATTATTTCGTGATTTTGA

Secondary structure and sequence

TSD    TIR
5'



3'
AAAAAATAA       A                    ATA   A  C  C                              C     ---------------                      A              --------------     T                        C       T A A                  T  -ACAC            A   --   --AACAACATG    CAA
         GGGCTGC TGTAGCAATCAACCTGTAAT   TGC CT AA TAGGATCACTCTGTACTTTCGACCTCTACC AATTC               TCTTCTTCCTAATTCCACCTAA CTATAAAATTCTAT              TCAAT AATCTCTGAAATTGCGATTTAAAA CAATAAT C C TTCATTATTTCGTGATTT GA     CAGAGTTTAAAA TTT  CTC           TCAA   
         ||||||| ||||||||||||||||||||   ||| || || |||||||||||||||||||||||||||||| |||||               |||||||||||||||||||||| ||||||||||||||              ||||| |||||||||||||||||||||||| ||||||| | | |||||||||||||||||| ||     |||||||||||| |||  |||           ||||   C
         CCCGACG ACATCGTTAGTTGGACATTA   ACG GA TT GTCCTAGTGAGACATGAAAGCTGGAGATGG TTAAG               AGAAGAAGGATTAAGGTGGGTT GATATTTTAAGATA              AGTTA TTAGAGACTTTAACGTTAAATTTT GTTATTA G G AAGTAATAGAGCGCTAAA CT     GTCTCAAATTTT GAA  GAG           AGTT   
AATAAAAAA       A                    GAA   C  A  C                              T     TGGGACATAAAAAGA                      A              GATTAATTGGTTTA     T                        A       T C A                  C  ATATA            A   CT   CCGATTCGAAA    ACA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End