SE0230046

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4563
  • Arabidopsis lyrata
  • SE0230046
  • hAT
  • Hat19
  • scaffold_4:14719837-14720304
  • ATTCTATG
  • CAGTGCC

Secondary structure and sequence

TSD    TIR
5'



3' 
ATTCTATG           -  T    TAA  AAGGGAAGCGGCTGTTTAGGGCCTCCACTTGATATTATATTGTCTCACATTTTTGTAAGTAAATGTTTGTGTATTTTGTATGGTATTTCTCAAGTTTTTCTTAAGTATTGAATTTAACTATGTAATTCTCTAAAAAATCATGTGAGTTTAATGTTATTTGTTTCTTTACTGAAGTACGTGTAGATGTATGAAGTGGTTTAAACA
        CAGTGCCGGCC CT AGCA   GC                                                                                                                                                                                                            
        ||||||||||| || ||||   ||                                                                                                                                                                                                            A
        GTCACGGCCAG TT TGTA   AA                                                                                                                                                                                                            
GTATCTTA           G  -    ---  ACTCACGGGATTCGCTTTTTTTTGTAACAGCTGGTTTTAAATGAAAATTTTTTAAAGATCTTTTATTAGTAAGGTAAAACAGTTTAAATCGACATATTAAACCAACAATCCTTACTAATTCTCTACGATTGATATATAATACTAACGATTTTGACATATATACATATACAAAAATACTAATGTGCTGTTTAAACATTCAAAGAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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