Plant MITE

SE0230049

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4566
Arabidopsis lyrata
SE0230049
hAT
Hat3
scaffold_7:14601073-14601336
GCTAGTAG
GCTAGTAGCAGGGCCGGCCCAGACCTAAAGCCCAGCAAGCAGATGCTT

Secondary structure and sequence

TSD TIR

5'

3'

        AG               -----------                --CA       -------    C   A    CTATATGTATTTTAAAGGGCATCAAAATTACAAAAGTGTCTTGTAGTCTAGTGGTATTTAG
  GCTAGT  CAGGGCCGGCCCAGA           CCTAAAGCCCAGCAAG    GATGCTT       TAGG ATC AATT                                                             
  ||||||  |||||||||||||||           ||||||||||||||||    |||||||       |||| ||| ||||                                                             G
  TGATCG  GTCCCGGCCGGGTTT           GGATTTCGGGTTGTTT    CTACGGG       TGTT GAT TTTA                                                             
GA      --               CTAAGTACTAC                TAAA       TAAATGT    -   T    TTTTTTTTAATTTTAAATGTCAACGGTCCTTAGCTTGGGAGTTGTTAGATAGGAATTCACT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0230049

GCTAGTAGCAGGGCCGGCCCAGACCTAAAGCCCAGCAAGCAGATGCTTTAGGCATCAAATTCTATATGTATTTTAAAGGGCATCAAAATTACAAAAGTGTCTTGTAGTCTAGTGGTATTTAGGTCACTTAAGGATAGATTGTTGAGGGTTCGATTCCTGGCAACTGTAAATTTTAATTTTTTTTATTTTTAGTTGTTGTAAATGGGCATCAAATTTTGTTGGGCTTTAGGCATCATGAATCTTTGGGCCGGCCCTGGCTAGTAG

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