Plant MITE

SE0250050

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4567
Arabidopsis lyrata
SE0250050
PIF/harbinger
To16
scaffold_2:1592788-1593066
TTA
AGACCATCTCCAATGTATTTCCCTATTT

Secondary structure and sequence

TSD TIR

5'

3'

TT   C          G      CC     TTAG     -TC     AA             T     TTTTT  T   ATGTGTTC                 AA --   TTAACTCTATTTATAGAGGAAAAAATAGAGATTCTCTA
  AGA CATCTCCAAT TATTTC  TATTT    CTCTA   TCTAT  TAGAGGTAAATTT CTCTA     AC CCA        CTCTATTTTTTCCTCTA  A  AGT                                      
  ||| |||||||||| ||||||  |||||    |||||   |||||  ||||||||||||| |||||     || |||        |||||||||||||||||  |  |||                                       
  TCT GTAGAGGTTG GTGGAG  ATAAA    GAGAT   AGATA  ATCTCCATTTAAA GAGGT     TG GGT        GGAGATAAGAGTGGAGA  T  TAT                                      
AT   C          G      AT     --CG     TTA     AA             C     -----  -   --------                 -- TT   CTCTAGAGATAAAAAAAGAGATATATATCTCCACTCTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0250050

TTAGACCATCTCCAATGTATTTCCCTATTTTTAGCTCTATCTCTATAATAGAGGTAAATTTTCTCTATTTTTACTCCAATGTGTTCCTCTATTTTTTCCTCTAAAAAGTTTAACTCTATTTATAGAGGAAAAAATAGAGATTCTCTATTCTCACCTCTATATATAGAGAAAAAAATAGAGATCTCTATTTTAGAGGTGAGAATAGAGGTGGGTTGGAGCAAATTTACCTCTAAAATAGAATTTAGAGGCAAATATAGAGGTGGGTTGGAGATGCTCTTA

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