Plant MITE

SE0210051

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4568
Arabidopsis lyrata
SE0210051
Tc1/Mariner
St6
scaffold_6:19325212-19325478
TA
TACTCCCTCCGTATTTGAATAAATGTCGTTCTAGCCTTTTTTCTGTGTTTT

Secondary structure and sequence

TSD TIR

5'

3'

         C         T          C    CT     CT   TT  ---TAATT     - CATTTTAACAACTTTTGCATAAAATTTCCTAAATTACCCCCAATTAATTGATCATAATTAATCAGTCTA
TACTCCCTC GTATTTGAA AAATGTCGTT TAGC  TTTTT  GTG  TT        AGTTG T                                                                     
||||||||| ||||||||| |||||||||| ||||  |||||  |||  ||        ||||| |                                                                     A
ATGAGGGAG CATAAACTT TTTACAGCAA GTTG  AAAAA  CAC  AA        CGTAT T                                                                     
         A         T          A    AC     CC   TT  TTCTTTCC     C TAATGTTTTGATTGGAATACTCTTTGCTAATAAATGTTAATATAAAAACCATATACATCAAAACCATTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0210051

TACTCCCTCCGTATTTGAATAAATGTCGTTCTAGCCTTTTTTCTGTGTTTTTAATTAGTTGTCATTTTAACAACTTTTGCATAAAATTTCCTAAATTACCCCCAATTAATTGATCATAATTAATCAGTCTAAATTACCAAAACTACATATACCAAAAATATAATTGTAAATAATCGTTTCTCATAAGGTTAGTTTTGTAATTCTATGCCCTTTCTTAATTCACCCAAAAACAGTTGAAACGACATTTTTTCAAATACAGAGGGAGTA

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