SE0210053

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4570
  • Arabidopsis lyrata
  • SE0210053
  • Tc1/Mariner
  • St7
  • scaffold_1:31484394-31484636
  • TA
  • TACTCCCTCCGTCCCACAAAGATGAATTTTTTTGAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
                        A       T    --A      -  T CCACAAAAATTGAAGTTTTGTGTTTTCAATGTCAAATTTAAAACAGTTTCCCTATTTTACACTTATTAAACA
TACTCCCTCCGTCCCACAAAGATG ATTTTTT GAAA   TAAATT TG C                                                                        
|||||||||||||||||||||||| ||||||| ||||   |||||| || |                                                                        A
ATGAGGGAGGCAGGGTGTTTCTAT TAAAAAA CTTT   GTGTAA AA A                                                                        
                        C       T    AAA      G  - TTCTTTATTACATATTACTGTTAAAATTGGAAAATTGAAAAATTGTATAAAATTTCTCATATAATAAATAAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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