SE0250055

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4572
  • Arabidopsis lyrata
  • SE0250055
  • PIF/harbinger
  • To17
  • scaffold_1:9975493-9975700
  • TTA
  • AGAGCATGTTTATC

Secondary structure and sequence

TSD    TIR
5'



3' 
TT              AATAAAACTC   GAGTATCACAAGCATTATTTAATATTAAATTAATTAATTGTTTAATCAATGTCGAATGAAACCGTATCAGAAGTCTCTAC
  AGAGCATGTTTATC          TAC                                                                                
  ||||||||||||||          |||                                                                                 
  TCTCGTACAAATAG          GTA                                                                                
AT              ----------   CTATAAACTACCCATAGTCGGGTACTTTTTATAATTTTTTTAAGTAAAACCCAACTCTAACCCGACTTTGCCAAGTCACC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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