SE0230059

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4576
  • Arabidopsis lyrata
  • SE0230059
  • hAT
  • Hat23
  • scaffold_5:5435504-5435987
  • TCTGAGAG
  • TCTGAGAGCCCTGTTCTAAAAATC

Secondary structure and sequence

TSD    TIR
5'



3'
    G   G  C     T                --- CCGCCTAGGCGGCCGCCTAGGCGCTGATCGGAGGAGCACCGCGGCGATTTTGTCCAAATCGGTGAGAAAAATCGGAGATCCGATTTTTTGTCCGCCTAGACCGCCTAGGCGGCCGCCTAGCCCGCCTAGACGGCGCCTAGCCCAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTCATCTAAAATTCAAAATGTCCTACTTATGTTC
 TCT AGA CC TGTTC AAAAATCGGCCGCCTA   G                                                                                                                                                                                                              
 ||| ||| || ||||| ||||||||||||||||   |                                                                                                                                                                                                              G
 AGA TCT GG ACAAG TTTTTAGCGATCCGCG   A                                                                                                                                                                                                              
G   G   -  C     T                ATC GCCCGCCACTCCCACGCGGATCGCGGATCGTTCTTTTAGCCCCTAATGTGCCCCTAATTAGCCCCTAATCAAAATCCCGATAAATTATAAAATTTTTGTATAATTAGGTAATATTAATTCTTTAAATATATTATAACAAAAATTTTAACATAATTTGTGTACTTTTGTTCTAAAATTAAAGTTTAAATACTAAAAATATGTTTAAT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End