SE0220060

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4577
  • Arabidopsis lyrata
  • SE0220060
  • Mutator
  • M4
  • scaffold_3:23840019-23840494
  • ATATTTTTA
  • TATGGGAAAAATGTCATTTAAATCATTAGTTTGCCATTTTCGTTGGTTTAAAGCATGAACTATGGAGCTGGTGATTTAAATCCTTA

Secondary structure and sequence

TSD    TIR
5'



3' 
ATATTTT                            G                       G      CTA    G                   TTTTATG      TTATGATTTAAATCCTCAATTTTATGTTGACCTTTAATTTAATCACGAATTCTCGTTGACTAAGCCAATTGAGGCACATTGTTAACTGGCTCAACGGAGCAATCGAACGAAGAAAAAGATGGAAACCATGTTGGT
       TATGGGAAAAATGTCATTTAAATCATTA TTTGCCATTTTCGTTGGTTTAAA CATGAA   TGGA CTGGTGATTTAAATCCTTA       TAGATC                                                                                                                                       
       |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||   |||| |||||||||||||||||||       ||||||                                                                                                                                       G
       ATACCCTTTTTACAGTAAATTTAGTAGT AAATGGTAAAAGCAACCAAATTT GTACTT   ATCT GACCACTAAATTTAGGAAT       TAAAAT                                                                                                                                       
TATTTTT                            G                       A      AAG    A                   -------      ACAACTAAAAGTAAAAATAGTACTTAAGAGTAATTGTTTCGGTTAACTCTGTGTAGCGATTGACCGATTTGCCTAATTATTCTGCTACAGTAGCGTATTGACTGTGAAGCTTCGGTAGTGTATTAAAAAGAAGAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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