Plant MITE

SE0210061

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4578
Arabidopsis lyrata
SE0210061
Tc1/Mariner
St9
scaffold_1:14718877-14719122
TA
TACTCCCTCCGTTTCACAAAGAGTATTGTTTTAAGGTTTT

Secondary structure and sequence

TSD TIR

5'

3'

         C              A        -A      AATCTCGTTT     -     ---   G   TCTGTTTTCAATGTAGTTTTAAAGAAGAATTCTCTTTTTTATCCATACTATTTCA
TACTCCCTC GTTTCACAAAGAGT TTGTTTTA  GGTTTT          CACAA AGAGT   GCC TTT                                                       
||||||||| |||||||||||||| ||||||||  ||||||          ||||| |||||   ||| |||                                                       G
ATGAGGGAG CAAAGTGTTTCTCA AGTAAGAT  TCAAAA          TAATT TTTTC   TGT TTA                                                       
         A              C        AG      ---GTGTGTT     C     ATT   -   AAGTAAATATGGGAAATAATTATGTGATTTCTTATGAGAGAGAGATTAATTATTC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0210061

TACTCCCTCCGTTTCACAAAGAGTATTGTTTTAAGGTTTTAATCTCGTTTCACAAAGAGTGCCGTTTTCTGTTTTCAATGTAGTTTTAAAGAAGAATTCTCTTTTTTATCCATACTATTTCAGCTTATTAATTAGAGAGAGAGTATTCTTTAGTGTATTAATAAAGGGTATAAATGAAATTTGTTTACTTTTCTTAATTTGTGTGAAAACTGATAGAATGACACTCTTTGTGAAACAGAGGGAGTA

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