SE0230063

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4580
  • Arabidopsis lyrata
  • SE0230063
  • hAT
  • Hat24
  • scaffold_6:14169600-14169864
  • ATTCGAAA
  • TTCGAAACAGGGCCGGCCCAAG

Secondary structure and sequence

TSD    TIR
5'



3' 
A      A               AGAA         TAAAGCAAAAAAAAATGTTGGCCCATCATTAAATACAATTAAAAAAAATTTCTATAAAAAGTACACTGAGTAGGTTCGAACTCAGCAGATCTAAGAAG
 TTCGAA CAGGGCCGGCCCAAG    AATGATGCC                                                                                                  
 |||||| |||||||||||||||    |||||||||                                                                                                   
 AAGCTT GTCCCGGCCGGGTTC    GATTTCGGG                                                                                                  
A      A               ---C         CATTTTGTACCCGAAATCCGTAGTCTATAGATATTTTGCTAAATTCCCGTAGTAAAATGTCTATAAATAACACCATCTCACCAATAGTGGAAGTCAGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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