Plant MITE

SE0230064

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4581
Arabidopsis lyrata
SE0230064
hAT
Hat25
scaffold_109:110-310
CGTGGACC
T

Secondary structure and sequence

TSD TIR

5'

3'

CG      - A    C  -- T   C CATGTGCGGAGAGTGCTCATGCACAGGGTCCAAAATTTTTTTGTCTTTTTTTTTAAAACTAAATTTATTAAAATTAG
  TGGACC C GTGC GG  C CTC C                                                                             
  |||||| | |||| ||  | ||| |                                                                             G
  CAGGTG G TCCC GG  G AGT T                                                                             
 C      C -    -  CC -   - TTTTTAATTCTTGGGACTCGACTTTTTTTATTAACCGGGATTAAAGAATACATATATATATTTTTTTTTTAAACCTG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0230064

CGTGGACCCAGTGCCGGCTCTCCCCATGTGCGGAGAGTGCTCATGCACAGGGTCCAAAATTTTTTTGTCTTTTTTTTTAAAACTAAATTTATTAAAATTAGGGTCCAAATTTTTTTTTTATATATATACATAAGAAATTAGGGCCAATTATTTTTTTCAGCTCAGGGTTCTTAATTTTTTTGAGCCGGCCCTGCGTGGACC

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