SE0250065

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4582
  • Arabidopsis lyrata
  • SE0250065
  • PIF/harbinger
  • To1
  • scaffold_1:4431909-4432098
  • TAA
  • AGACCACCATTAACAAGGGTATCTTAAAGA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA   C  CC        G             -------------     TAAGTAAGAAATGTGGCTTAGCTAAGACCCAAAACTAAGAAAAGTGGCTTA
  AGA CA  ATTAACAA GGTATCTTAAAGA             GTTTT                                                   
  ||| ||  |||||||| |||||||||||||             |||||                                                   G
  TCT GT  TAATTGTT CTATAGAATTTTT             ATAAT                                                   
AA   C  AC        A             ACCAAGAATCTTC     TTCATTATTATACTGTACACCAACCAAGAATTCCAATCAAAACCCAGAATC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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