Plant MITE

SE0250067

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4584
Arabidopsis lyrata
SE0250067
PIF/harbinger
To11
scaffold_4:14128530-14129026
TAA
AGGGGGTGTTATTGGTT

Secondary structure and sequence

TSD TIR

5'

3'

TA                 CCTA     C     AT     -         --------    -   ATAGAAAGTAAACAAATGAAAGATTTTAAACTACTGTTAGAGAGTTTTTGAGAGTTTTCTATAATCTTGTTGATTAGTATTTCATAATCTTGTAAAGTTTTCCAAACAATCTCTCTATTTTCATGATACTTTTCATGACTTTGTTTTGTGAAGAAAAGCGTAAAAAGTCATAAACCAATAACATTAT
  AGGGGGTGTTATTGGTT    ATTTA ATGGA  TTTGA TGACTTTAA        TAAA ATC                                                                                                                                                                                           
  |||||||||||||||||    ||||| |||||  ||||| |||||||||        |||| |||                                                                                                                                                                                            
  TCCCCCACAATAACCAA    TAAAT TATCT  AAACT ACTGAAATT        ATCT AGA                                                                                                                                                                                           
AA                 ACAC     T     -C     C         TACAATAC    T   CAACAATAAGTTAGTTCTAAAAAATTTTCAAACAATTTCAAACCACAATAATCAAATTCTAAACATTTTTCATTAGATTTTAGAAGTATTTAGACCTCAATAACCTAAGTATGAAAATGTTTCAGTAATTTTCAAAACACAATAAGTTAATGTTGTTTTCTTAGATACTAACAATTACTTAATTTAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0250067

TAAGGGGGTGTTATTGGTTCCTAATTTACATGGAATTTTGATGACTTTAATAAAATCATAGAAAGTAAACAAATGAAAGATTTTAAACTACTGTTAGAGAGTTTTTGAGAGTTTTCTATAATCTTGTTGATTAGTATTTCATAATCTTGTAAAGTTTTCCAAACAATCTCTCTATTTTCATGATACTTTTCATGACTTTGTTTTGTGAAGAAAAGCGTAAAAAGTCATAAACCAATAACATTATAATTTAATTCATTAACAATCATAGATTCTTTTGTTGTAATTGAATAACACAAAACTTTTAATGACTTTGTAAAAGTATGAATCCAATAACTCCAGATTTATGAAGATTTTAGATTACTTTTTACAAATCTTAAACTAATAACACCAAACTTTAACAAACTTTTAAAAAATCTTGATTGAATAACAACAGATTCTACATAACATTTAAAGTCACTCAAACTCTATTTAAATCACAAACCAATAACACCCCCTAA

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