SE0230068

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4585
  • Arabidopsis lyrata
  • SE0230068
  • hAT
  • Hat26
  • scaffold_2:1153982-1154160
  • GTGCCAAT
  • GTGCCAATCAGAGCCGGTCCGGAG

Secondary structure and sequence

TSD    TIR
5'



3' 
    T  CA     A            GGCAAGCAA    A   ATCGCTTAGGGTCTCACATTATAAAATATTTTTTTTGGGAGAATTTTTTTT
   G GC  ATCAG GCCGGTCCGGAG         GTGA GCC                                                   
   | ||  ||||| ||||||||||||         |||| |||                                                   T
   C CG  TGGTC CGGCCAGGTTTC         TTTT AAA                                                   
TAA -  --     C            -----AAAG    -   AGAAACTATGGGATGCGTATTGATTTTTAAATCCGGAAAAACAATTACATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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