SE0230070

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4587
  • Arabidopsis lyrata
  • SE0230070
  • hAT
  • Hat9
  • scaffold_6:19559674-19560391
  • AGAAAACC
  • TAGGCCTGGGCA

Secondary structure and sequence

TSD    TIR
5'



3' 
AGAAAACC    C       ----AAAAA    TACCCGAGTACCCGAACCGAAACCGACCCGAAAAAACCGGTTCGGGGCGGGTACGGGTATTAGCTATTTACCCTATTGGGTCTTGTATTGCCGTACCCGTGGGTATAGGGTAAAACCCGATCCGAACCCGATACCCGAACGGGTACCCGATTACCCGAAATTACATATACTTATACATATAAAACTTTTTATATATGTAATATTTGAGCTAAATACATTTATATCTAAATATCCGAGAATAGTTACCAAAAATTAAATGCACTTATATTTAAATATTTAAGACAAAATATATTTATACGCGAGATGCTTGTAAATTTTTTAAATATTT
        TAGG CTGGGCA         ACCG                                                                                                                                                                                                                                                                                                                                        
        |||| |||||||         ||||                                                                                                                                                                                                                                                                                                                                         
        ATCC GACCCGT         CGCC                                                                                                                                                                                                                                                                                                                                        
CCAAAAGA    C       AAGCCCATA    CAGCCCAAGCCCATTTTGGGCTAGCCCATGCCCAGAAAGCCCATCTCCTCAAATCCTGGGTTATCCCATTTAGATTTTATAGTCAAGCCAAAGCCAAGCCTAGATTAGCCCAAGCCCAGCCAAGCCCAAATCTAAAAATCTTGGCGATTTATGGGTTTTTTTAGCCCATGGGTAGCCCAAGCCCATAAAATATGGGTTTATGGGTTTTAAAATGGTTTATGGGCTTAAAATAGGCTTTAAAATAGGATTATAGGCTTTAAATAGGCGTTAAAATGAGATTATAGGCTCAAAGTGGGCTTTTAAATAGGTTTATTGGCCTTAAAAAAGG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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