Plant MITE

SE0230072

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4589
Arabidopsis lyrata
SE0230072
hAT
Hat27
scaffold_4:13401362-13402073
GTTGCTAC
GCTACTAGGCATGTCAAT

Secondary structure and sequence

TSD TIR

5'

3'

GTT  T               --    CTAGCCTGGCCCGGCCCGGCCTGAAACCCGCAAAACCCGTACATATTTGAGCCCAGCCCGGCCCGGCCCGTAAAAATTCCGACCCTATATTTTAAAGCCCGGTCCGGCCCTAACAGGGCTACAGAGGTTTTCCGGGCTTTTTTGGGCTTTTCTTCCGACAAAAAAAAACAAACTTATAATTTTTAATATCTCTTAAAAAAATCTATATATGAAACGAGTCAATCAAAATTTAAATAACCACTAACGCTAATTTAGGTTTTTAAAAAAGAGTTAAAATCAAATAAATAATCCAAATAAATTGTTTAAACTTATACTAAATAAAATATAGAA
   GC ACTAGGCATGTCAAT  CGGG                                                                                                                                                                                                                                                                                                                                          
   || |||||||||||||||  ||||                                                                                                                                                                                                                                                                                                                                           
   CG TGATCTGTACAGTTA  CCCG                                                                                                                                                                                                                                                                                                                                          
CAT  T               AT    GTTTCGGGCGCCCGATCGGGCCGGGTCGGGACTTTTTGTCGCCCGAGCCTGAAGTTTTATATACAGGTCTTTTTTTATCCGGAAAGCCCGATTCGGGCAATCCCGATTTCCCAAAAAACCCGAATCGGGCCGGCCCGAGCCCGATCGGGCTTTTCGGGAATTTTTTTATAAAACTGTAAAAAAACAATTATAAAAGCAAATTAACATTCTAAACAACATTGTTTTTAAAAACTATCTCAACTTTTGGGATTTGAATCAAAAAAAACAACACATCATGATATTTAGCTTTTTCGTTTATAATCGAGATGATGGATTAAACTTAATAAAACT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0230072

GTTGCTACTAGGCATGTCAATCGGGCTAGCCTGGCCCGGCCCGGCCTGAAACCCGCAAAACCCGTACATATTTGAGCCCAGCCCGGCCCGGCCCGTAAAAATTCCGACCCTATATTTTAAAGCCCGGTCCGGCCCTAACAGGGCTACAGAGGTTTTCCGGGCTTTTTTGGGCTTTTCTTCCGACAAAAAAAAACAAACTTATAATTTTTAATATCTCTTAAAAAAATCTATATATGAAACGAGTCAATCAAAATTTAAATAACCACTAACGCTAATTTAGGTTTTTAAAAAAGAGTTAAAATCAAATAAATAATCCAAATAAATTGTTTAAACTTATACTAAATAAAATATAGAATCAAAATAATTCAAATTAGGTAGTAGAGCTAATATTTGCTTTTTCGATTTATAGTACTACACAACAAAAAAAACTAAGTTTAGGGTTTTCAACTCTATCAAAAATTTTTGTTACAACAAATCTTACAATTAAACGAAAATATTAACAAAAAAATGTCAAAATATTTTTTTAAGGGCTTTTCGGGCTAGCCCGAGCCCGGCCGGGCTAAGCCCAAAAAACCCTTTAGCCCTAACGGGCTTAGCCCGAAAGGCCTATTTTTTTCTGGACATATATTTTGAAGTCCGAGCCCGCTGTTTTTCAGGGCTGGGCCGGGCTAGCCCGCGGGCTTTGGCCCTAATTGACATGTCTAGTTGCTAC

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