SE0220073

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4590
  • Arabidopsis lyrata
  • SE0220073
  • Mutator
  • M5
  • scaffold_4:17049275-17049646
  • AAATTAAAA
  • A

Secondary structure and sequence

TSD    TIR
5'



3' 
            AAATTAAA   GAAATCTAACTAATGTGCAACTTACTGTTCAAAAACTTAACAAAACTACCACAAAACATAAATATTTCCAAATGTGTCATAATGGTGGACAATGTTTCTTGTCTACCCAAATTTTTGTATGTCGTTTCGAATTCTTGTCCACCAAAGTCTATTGTTTCAAAGGTGGACA
                    AGA                                                                                                                                                                         
                    |||                                                                                                                                                                          
                    GAT                                                                                                                                                                         
AAAATTAAACCCTAAAACCA   TACACAGTAAATGACAATTTTTTGAATCATTTTAACGGTGTTTTGTATTTAGAAAAGGTTACACGGTATTACCACTTGTTGTGAAACTTTGCTTTTAAAAATGATCTATTCTTTACAACAGGTGGAAACTTTGTTGTATAATCTTTTTATAAACTTCCTGTTTTTTAGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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