SE0250076

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4593
  • Arabidopsis lyrata
  • SE0250076
  • PIF/harbinger
  • To14
  • scaffold_7:6571756-6572011
  • TAA
  • AGAGCAAACGCAGTGGCACACTTGT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                CA  CT   -TACTC      -------------TA       AC  TT      ----------TA  - C     TTACCTTTTCAACAAAAATTGGGTGTAGACTTACACTCAAGTGTG
  AGAGCAAACGCAGTGG  CA  TGT      GGGTGT               GTTATAA  AA  GAGAAG            TT G AAAAG                                             
  ||||||||||||||||  ||  |||      ||||||               |||||||  ||  ||||||            || | |||||                                             A
  TCTCGTTTGCGTCACC  GT  ACA      CCTACA               CAATATT  TT  CTCTTT            TC C CTCTA                                             
AA                TC  AC   TTAACA      TTCATTAACAAATAA       AA  TT      TTCTTTTTTCTC  T T     TCTCTCTCTATCTCTCTTCTTTAAAAAAAGATAAAAATATTATAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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