Plant MITE

SE0230080

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4597
Arabidopsis lyrata
SE0230080
hAT
Hat29
scaffold_4:18307544-18308133
AAAATATC
TAGGCCTGGGC

Secondary structure and sequence

TSD TIR

5'

3'

AAAATATC           ATTC        ATTC     CG TT      T  ----    TATCGGGTCTATTCGGGTAGGGGGTCAAGACCCATTCGGGTATTCTAAAAATTCGGTTCGGGTTCGGTTCGGGTTCGGGTCGGTTCGGGTATTTTAATAAAAAAGCAAAATATCCGAAAATAACCAAAAATACCCGGAATATTTTTGGGTTCGGGTCGGGTTTGGGTTTTTAACTCATATATACCCAAATCTAACCGAAATACCCGATTTCTTGAAAATACATTGGTTACTCTTTACCCAA
        TAGGCCTGGGC    GGGTACCC    GGGTT  G  CTTTTT TT    CGGG                                                                                                                                                                                                                                                 
        |||||||||||    ||||||||    |||||  |  |||||| ||    ||||                                                                                                                                                                                                                                                 A
        ATCCGGACCCG    TTTTATGG    GCCTT  G  GCTTAT GG    GGCT                                                                                                                                                                                                                                                 
CTATAAAA           ----        ----     -- --      -  GCTT    TTTTGGGCTTGTTATGGGCTTGGCTTGGGCTTGGGCTAAAAATTTTTATGGGCTTACCCAGGATTGGAGGATGGGCTTTTTTTGGGCTTGGCTTGGGCTTGGCTTAGGTTATGGGCTTACATGGGCTTATGTTTATATGTGGATTTTTATAATCAATAAAAATAAAAATATTATGGGCTTTATGGATTTTAATGTTAGTATTTTGGCTTATATAATCCATAAAATCTATAAAAACCAATAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0230080

AAAATATCTAGGCCTGGGCATTCGGGTACCCATTCGGGTTCGGTTCTTTTTTTTCGGGTATCGGGTCTATTCGGGTAGGGGGTCAAGACCCATTCGGGTATTCTAAAAATTCGGTTCGGGTTCGGTTCGGGTTCGGGTCGGTTCGGGTATTTTAATAAAAAAGCAAAATATCCGAAAATAACCAAAAATACCCGGAATATTTTTGGGTTCGGGTCGGGTTTGGGTTTTTAACTCATATATACCCAAATCTAACCGAAATACCCGATTTCTTGAAAATACATTGGTTACTCTTTACCCAAATATAACCAAAAATATCTAAAATACCTAATATATTCGGTTTTATGATTGTAATTTTAGGTATTTCGGGTATTATAAAAATAAAAATAACTAATATTTTTAGGTGTATATTTGTATTCGGGTACATTCGGGTATTGGATTCGGTTCGGGTTCGGTTCGGGTTTTTTTCGGGTAGGAGGTTAGGACCCATTCGGGTATTTTTAAAAATCGGGTTCGGGTTCGGTTCGGGTATTGTTCGGGTTTTTCGGTTCGGGTATTCGGTTCCGGGTATTTTGCCCAGGCCTAAAAATATC

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