SE0230083

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4600
  • Arabidopsis lyrata
  • SE0230083
  • hAT
  • Hat12
  • scaffold_3:3598906-3599409
  • GTTATATC
  • TATATCCCTTGTTTGAAAAATC

Secondary structure and sequence

TSD    TIR
5'



3'
GT    T         G       ---      --- G TA    -- GCGCTCGGCATGGGCCTAGCGATTAATCGGAAAATCGGATTAAAATCGGGGATTAATCGGGGATTAGTTTTAGGGTTATTTTAATATTTTTAAAACATATTAATCCAATGTTATTTTTAAAATTGCAGTAAACACATAAAAATGTATTTTTGAGACAAATATTTATGATTTTTATTAAAATATGAACATAAATTATTGTAAAACATTAC
  TATA CCCTTGTTT AAAAATC   GCTAGG   C C  GTCG  G                                                                                                                                                                                                                 
  |||| ||||||||| |||||||   ||||||   | |  ||||  |                                                                                                                                                                                                                 A
  ATAT GGGGACAAG TTTTTAG   CGGATC   G C  TAAT  G                                                                                                                                                                                                                 
CT    T         A       GGG      TGG - --    GA GGGCGAATTAGCGATCCGGGTGGGATAGGCGGAGCTAATTACTGATTAGGGAATTTCTTTAGTCAGTGGGCTAATGAGAGGCGGATTAGGCTAATAAGGGGCGGATTAGGCTAATAAGGGGCGGATTAGAATGTATGGGGCTAATAAAAATCTAACGGTCATATTTTTTTGAAAAATAAAAACAATAAGTTAGTAAACTTAACCCTCAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End