SE0230084

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4601
  • Arabidopsis lyrata
  • SE0230084
  • hAT
  • Hat30
  • scaffold_8:3022709-3023333
  • GATGTAAC
  • CCAGTGGCGGAGC

Secondary structure and sequence

TSD    TIR
5'



3' 
GATGTAA             CAG   -    ATTTACAGAGGTCATATATATTTAATTATTTTAATTATTTATAATATTAAATAATATATTTAATGTATGAATTATCAAAAATATTTGAAATTTGTTATCTAAAACAAAACAAAAAAATCATCTATTTTTAAAATGCTTCACTTTCCAAATAAAAGATATTTTTAGTCGTATTAAGTACTTTTGTTCTCAATTTTTTTTTAATCAAAATGTATAGCATATTGTGTTTCTCTAGACTTTTTCAAAAATATATGTTACAGAAATTTTTTATTAAAAAATGTAGCAA
       CCAGTGGCGGAGC   GAT TTTT                                                                                                                                                                                                                                                                                           
       |||||||||||||   ||| ||||                                                                                                                                                                                                                                                                                            
       GGTCACCGCCTCG   TCA GTTA                                                                                                                                                                                                                                                                                           
CAATGTA             --A   C    CCCTCCCCCCAGTCAACTGGGGGTATTTTTTAAATTTAAAAGTTAACAATCGATTTAAAACATTACGAATGATCTACTAAAACAGATTATAGAGATATTACTGGGGGTATCTATAAATAGGTTGGTACGAAAACTGAGTACGTACAAGTAAAGAGTAACTTGAAATTAAAACAAAAAGTAGAAATAAAGAAAAAAAAAACAAGTTTTATTGATCTTGAAAGATTAGAGAAGAATGTAGAAATAACAAAAGAAGAGAAAATCTGTACAGGATAAAATTAAAAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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