SE0230091

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4608
  • Arabidopsis lyrata
  • SE0230091
  • hAT
  • Hat32
  • scaffold_7:11078579-11079081
  • CATATAGC
  • TATAGCCAGGGCCGGC

Secondary structure and sequence

TSD    TIR
5'



3'
CA    GC   G          AGG    GC    GA  CGAGCGATTGGGGCCCCAAAATGTTAGGGCCTTTAAAACTCAAAATTTGTTAAGTTTTGGATATGCTGCAAAAGCAATAAATTTATTTTGTAGGGTCTTTTTTAAAAAATGATATGGGCTTTTAAAGACAAACTAATTATCTTCAACACTAAATTTTTGATTTAGTAAAAAAAACTCTAAAACGCTGATTGAATATAAAAAAAAAAAACTGACGCT
  TATA  CAG GCCGGCGCAG   CCAA  AACT  AG                                                                                                                                                                                                                        
  ||||  ||| ||||||||||   ||||  ||||  ||                                                                                                                                                                                                                         
  ATAT  GTC CGGCCGGGCT   GTAG  ACGC  TC                                                                                                                                                                                                                        
CG    AC   A          ---    --    --  ACGGGATGCGTTTCGAAGTTTTTCATACGTAAAAAGTATATAATGTTTTTTGTAATTGCTTAGTAATAGCCTAAACGTCAAAAGAAAAAATTTTGTTTAAACGTTCCTTTTTTGTTATTTAAGTTTTCGTTTTGATTGTTAATTGAAGTTTTTGATCCTAAAAAGTGAACATTTTATTAGTTTAACTGAGTGTATGTGCGTATTCTTCATAGTACA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End