Plant MITE

SE0210093

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4610
Arabidopsis lyrata
SE0210093
Tc1/Mariner
St6
scaffold_1:14975706-14975948
TA
TACTCCCTCTGTATTCGAATAGTTGTCGTTT

Secondary structure and sequence

TSD TIR

5'

3'

                     G         TAACTATAAT       ATTAAGAAAAA     AAATGA   TT TAACCTCATCTTTGTCTCTTGGTAATTTAGACTGAGTAATTGTGATCAATTA
TACTCCCTCTGTATTCGAATA TTGTCGTTT          TACGCTT           GTTGA      CTA  T                                                    
||||||||||||||||||||| |||||||||          |||||||           |||||      |||  |                                                    A
ATGAGGGAGGCATAAGCTTAT AACAGCAAG          ATGTGAA           CAATT      ACA  G                                                    
                     G         ----------       -AAAAAAAAAA     -AATCA   -- CAAAACTGTAAGGTTATGTTGAAAACGTATTCTGAAGGATTTAATTGGAGTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0210093

TACTCCCTCTGTATTCGAATAGTTGTCGTTTTAACTATAATTACGCTTATTAAGAAAAAGTTGAAAATGACTATTTTAACCTCATCTTTGTCTCTTGGTAATTTAGACTGAGTAATTGTGATCAATTAATTGAGGTTAATTTAGGAAGTCTTATGCAAAAGTTGTATTGGAATGTCAAAACGACAACTAATTAACAAAAAAAAAAAAGTGTAGAACGACAAGTATTCGAATACGGAGGGAGTA

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