SE0210095

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4612
  • Arabidopsis lyrata
  • SE0210095
  • Tc1/Mariner
  • St12
  • scaffold_8:22380953-22381173
  • TA
  • TACTCCCTCCGTTTCAAAATATAACGCGTTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
                        C       AGTTAAAAGCACGCCGA     AAGATCTACTTTTTAAAAGTTCAGCCAATCATAAAAGAGACTGCATAATAAAAATAATCATAA
TACTCCCTCCGTTTCAAAATATAA GCGTTTT                 TTAAG                                                               
|||||||||||||||||||||||| |||||||                 |||||                                                               A
ATGAGGGAGGCAAAGTTTTATATT CGCAAAA                 CTTTG                                                               
                        C       --------------CCT     AAAAAACAAAGTTTTATATTCAGCAAAAGTTCAAAAATACGTTTAATATATAATGAAATTATA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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