Plant MITE

SE0230098

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4615
Arabidopsis lyrata
SE0230098
hAT
Hat33
scaffold_4:14753365-14753598
CTGATGAC
TGATGACCAGTGGCGGAGGTAGGGTGTTAGTAG

Secondary structure and sequence

TSD TIR

5'

3'

C G  G C          ---------------       T        -------------     ----  ACTTGACCCCCATAACTTTTAGAAAATTTGTATATTAGGCTTAATTATTTGGTATTTGTT
 T AT A CAGTGGCGGA               GGTAGGG GTTAGTAG             GGGGG    TC                                                            
 | || | ||||||||||               ||||||| ||||||||             |||||    ||                                                            G
 A TA T GTCACCGCCT               CTGTCCC CAGTTATC             ATCTT    AC                                                            
C G  G C          TGGTCTTTATTTAAA       -        TTTTTTTTTTATT     CCCC  GTTTTTGTACTAAACTTCTATTCAATTACCCCAGTTGTAATTGTAAAATTTGTTTTAATA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0230098

CTGATGACCAGTGGCGGAGGTAGGGTGTTAGTAGGGGGGTCACTTGACCCCCATAACTTTTAGAAAATTTGTATATTAGGCTTAATTATTTGGTATTTGTTGATAATTTTGTTTAAAATGTTAATGTTGACCCCATTAACTTATCTTCAAATCATGTTTTTGCACCCCTTCTATTATTTTTTTTTTCTATTGACCCCTGTCAAATTTATTTCTGGTTCCGCCACTGCTGATGAC

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