SE0210101

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4618
  • Arabidopsis lyrata
  • SE0210101
  • Tc1/Mariner
  • St13
  • scaffold_5:14239833-14240086
  • TA
  • TACTCCCTCCGTTCTTTTATAAGTGATGTT

Secondary structure and sequence

TSD    TIR
5'



3' 
                 T            -    CAT  -----------  C CATAGATTAAGAAATCATTTAATTTTTGTTTATTTCTAAACTAAAACATCATTTATTATCTAATCAACCAATAAAAAAAA
TACTCCCTCCGTTCTTT ATAAGTGATGTT TTAG   AA           TG A                                                                                
||||||||||||||||| |||||||||||| ||||   ||           || |                                                                                 
ATGAGGGAGGCAAGAAA TATTCACTACAA TTTC   GA           AG A                                                                                
                 T            A    ---  ATATCAAAACA  - ATTTATCTACTACAAAAGTCGAAAGTTATGTTTTAATTAATGAAAAAATAACCAAAACTGCTAAATATAAGGCATCTAAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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