Plant MITE

SE0230102

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4619
Arabidopsis lyrata
SE0230102
hAT
Hat35
scaffold_3:12131368-12131640
CTTGCACG
TGCACGCAGAGCCGGC

Secondary structure and sequence

TSD TIR

5'

3'

CT    C           -----  A  AA -   AGGGGCCACAAGCCCAATTAATGTTTGGGCTAAATTATTATGTGAACAAAGCAAAAAAATCAAAAAATGTAAAAACTGTCTTTATGAGGGATCGAACTCAGGATAC
  TGCA GCAGAGCCGGC     GC GT  A TAT                                                                                                          
  |||| |||||||||||     || ||  | |||                                                                                                           
  ACGT CGTCTCGGCCG     CG TG  T CGG                                                                                                          
GC    T           AGAAA  -  -- T   TTACTTCGTACACGGACACCAGGGTATTATATTTACAGAATTAGCCGGGGTTTAAACATTTTACAGAGCAATCAGATCACCAAATTCACAATTTTCTATGATAGAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0230102

CTTGCACGCAGAGCCGGCGCAGTAAATATAGGGGCCACAAGCCCAATTAATGTTTGGGCTAAATTATTATGTGAACAAAGCAAAAAAATCAAAAAATGTAAAAACTGTCTTTATGAGGGATCGAACTCAGGATACCAGATAGTATCTTTTAACACTTAAACCACTAGACTAACGAGACATTTTACAAATTTGGGGCCGATTAAGACATTTATATTATGGGACCACAGGCACATGCTTCATTGGCTTGTGCAAAGAGCCGGCTCTGCTTGCACG

Copy Cancel