SE0210103

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4620
  • Arabidopsis lyrata
  • SE0210103
  • Tc1/Mariner
  • St14
  • scaffold_7:21498377-21498640
  • TA
  • TACTCCCTCTGTTTCAAAATATATGATGTTTTG

Secondary structure and sequence

TSD    TIR
5'



3' 
                AAA    T         ---AC    -    CATATTTTAAGAAATTAATTTTTGCTTTTAAAAACTATCATTTAATATGTAATTTAGTAGAATTCAACCAGTGATATAAAAGACTGC
TACTCCCTCTGTTTCA   TATA GATGTTTTG     TAAA AGCA                                                                                       
||||||||||||||||   |||| |||||||||     |||| ||||                                                                                        
ATGAGGGAGACAAAGT   ATAT CTACAAAAT     AAAT AAAC                                                                                       
                AAA    C         CTCAA    C    AAAGTTTTATTTCCTACAAATGTTAAAAGATACGTTGAAAATTTACTGAAAATTTACGTAAACTATAAAATAGTGATAAATACAAGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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