SE0230108

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4625
  • Arabidopsis lyrata
  • SE0230108
  • hAT
  • Hat12
  • scaffold_1:6405040-6405501
  • ATTTGTAC
  • GTACCCTTGTTTGAAAAATC

Secondary structure and sequence

TSD    TIR
5'



3' 
ATTT    ----        G       ---   A    -------  AGTCGGGCGCTCGGCATGGGCCTAGCGATTAATCGGAAAATCGGATTAAAATCGGGGATTAATCGGGGATTAGTTTTAGGGTTATTTTAATATTTTTAAAATATATTAATCCAATATTGTAAAAATTTATGATTTTTATTACAAATTTATGATTTTTATTAAAATTTGAACACAAGTTATTGTAAAACATCA
    GTAC    CCTTGTTT AAAAATC   GCT GGCG       CT                                                                                                                                                                                                
    ||||    |||||||| |||||||   ||| ||||       ||                                                                                                                                                                                                C
    CATG    GGGACAAG TTTTTAG   CGG ATCG       TG                                                                                                                                                                                                
        TTTA        A       GGG   -    GGGCTAA  AGGGGCGAATTAGTGATCCGGGTGGGATAGGCGGAGCTAATTACTGATTAGGGGATTTTTTAGTCATTGGGCTAATAAGAGGCGGATTAGGCTAATGAAAGGCGGATTAGAATATATGGGACTAATAAAAAATCTAACGTTCATATTTTTTTGAAAAATAAAAACAATAAGTTAGTAAACTTACCTCTCAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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