SE0230109

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4626
  • Arabidopsis lyrata
  • SE0230109
  • hAT
  • Hat29
  • scaffold_2:2062642-2063315
  • GGTGGAAC
  • CTAGGCCTGGGC

Secondary structure and sequence

TSD    TIR
5'



3' 
GGTGGAA            ATT   GT     T    -      -T - TTT -    C -     -----      -    - GGGTAGGGGGTCAAGACCCATTCGGATATTCTAAAAATTTGGTTCGGGTTCGGTTCGGGTTCGGGTTCGGTTCGGGTATTTTAATAAAAATACAAAATACCCGAAAATAACCAAAAATACCCAAAATATTTTCGGGTTCGGGTCGGGTTCGGGTTTTTAACTCATATATACCCAAATCTAACCGAAATACCCGATTTCTCAAAAATACATTGGTTACTCTTTATCTAAATATAACCAAAAATATCTAAAAATACTAAAATTACC
       CTAGGCCTGGGC   CGG  ACCCG TCGG GTTCGG  T C   T TTTT G GGTAT     CGGGTC TATT C                                                                                                                                                                                                                                                                        
       ||||||||||||   |||  ||||| |||| ||||||  | |   | |||| | |||||     |||||| |||| |                                                                                                                                                                                                                                                                         
       GATCCGGACCCG   TTT  TATGG GCCT GGCTTA  G C   T GGCT T TTGGG     TATGGG TTGG T                                                                                                                                                                                                                                                                        
CAAGGTG            ---   --     -    T      TG G --- T    - T     CTTTT      C    C TGGGCTTGGGCTAAAAATTTTTATGGGCTTACCCAGGATTGGAGGATGGGCTTTTTTTGGGCTTGGCTTGGGCTTGGCTTAGGTTATGGGCTTACATGGGCTTATGTTTATATGTGGATTTTTATAATCAATATAAATATAAATATTATGGGCTTTATGGATTTTAATGTTAGTATTTAGGCTTATATAATCCATAAAAACTCATTAAGCCTATGTAAACCTATATAAACCAATTTTTCATTGATTACTACATCAAAAGAAAAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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