SE0210113

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4630
  • Arabidopsis lyrata
  • SE0210113
  • Tc1/Mariner
  • St16
  • scaffold_8:13307654-13307936
  • TA
  • TACTCCCTCCGTTCCTGAAAGTTTGATGTTTTAGTGTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
         C                        T    ------TA  TTTGTTCCACAAAGATTGATTTTCTGGCTTTTTATTTTATTTTTTATTAATTGATATTAACAAATCGTAGATTTCAAGGCGTAATGATTACAAAT
TACTCCCTC GTTCCTGAAAGTTTGATGTTTTAG GTTT        GG                                                                                               
||||||||| |||||||||||||||||||||||| ||||        ||                                                                                               A
ATGAGGGAG CAAGGACTTTTAAACTACAAAATC TAAA        TA                                                                                               
         A                        T    TGTGTATA  ATTCTTTGTTAGTACTAAATTAGTAAATTATTAAAAAAGAAAAATAATTTATAAAAATTATTATATACTTGATTATCATTAGATTTTGTCAATTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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