SE0220114

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4631
  • Arabidopsis lyrata
  • SE0220114
  • Mutator
  • M3
  • scaffold_2:3465527-3465970
  • AATATCAAT
  • GGGAAAACGGCCTTTTTCAACCTCAACTATTTGCTGGCGGGTTTTTCCAACCCAAACTATGATCCCTAGTCGATTTCAACCCGAACCCAAAAATAATACAAAATCAAAACCTAAACTAATGTAAATGAGCCGATTTCAACACGACGTGAAACAATGTTAGTTCGGAAGTTAACAGTTCTCAA

Secondary structure and sequence

TSD    TIR
5'



3'
AATATCAATA                                  T                         GAT  -                           A    A       A    CTA             G                     A   AA                   A   -     AGTTATT       -A    -   G    G
          GGGAAAACGGCCTTTTTCAACCTCAACTATTTGC GGCGGGTTTTTCCAACCCAAACTAT   CC CTAGTCGATTTCAACCCGAACCCAAAA TAAT CAAAATC AAAC   AACTAATGTAAAT AGCCGATTTCAACACGACGTG AAC  TGTTAGTTCGGAAGTTAAC GTT CTCAA       TGATTTT  TTTT CAG GTTT 
          |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||   || ||||||||||||||||||||||||||| |||| ||||||| ||||   ||||||||||||| ||||||||||||||||||||| |||  ||||||||||||||||||| ||| |||||       |||||||  |||| ||| |||| A
          CCCTTTTGCCGGAAAAAGTTGGAGTTGATAAACG CCGCCCAAAAAGGTTGGGTTTGATA   GG GATCAGCTAAAGTTGGGTTTGGGTTTT ATTA GTTTTAG TTTG   TTGATTACGTTTA TCGGCTAAAGTTGTGCTGCGC TTG  ACAATCAAGCTTTTAATTG CAA GAGTT       ATTAAGA  GAGA GTT TAAG 
ATAACTATAA                                  T                         -AT  A                           A    A       C    AGC             A                     C   CC                   C   T     GGAACCC       GA    T   G    T

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End