SE0230115

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4632
  • Arabidopsis lyrata
  • SE0230115
  • hAT
  • Hat4
  • scaffold_6:3200677-3201116
  • CTTAACGG
  • GGCAGTGGCGGAGGTAG

Secondary structure and sequence

TSD    TIR
5'



3' 
CTTAAC             G   ---CATAGAAA   ---G      AACTGACCCCGGTGAATTTTCAAAATCAAACTAATATTATGGCATATTTAAACAAATACATAGATATTTGATTAAATTCCTATAAATTGACCCCAGTGCCTAATATGAAAACTACTCTTTTGACCCCTTAAACCATAACTTTTTTAATATTACAAAATGATATAGACTATAACCAC
      GGCAGTGGCGGAG TAG           CAT    GGGGTC                                                                                                                                                                                
      ||||||||||||| |||           |||    ||||||                                                                                                                                                                                 
      TCGTCACCGCCTC ATC           TGG    AGTTTT                                                                                                                                                                                
GGCAAT             G   TTAAATTTAAA   CCCC      ATATTTTTTATAAAATTATTTCACACCAACAAAAAAAAGAAGTTTAATATAACGTATATCGAATACAAAAAAAATAATGTAAATGTTTTTACTTTAAGACTATAAATATTTTTGTAAACCAAACAGATTTTGTACTATTATTTTAATTTTTGTTTCTTTGAATATATATTGTTAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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