Plant MITE

SE0210117

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4634
Arabidopsis lyrata
SE0210117
Tc1/Mariner
St1
scaffold_1:9486060-9486304
TA
TACTCCCTCCGTTTCGTTTTAGTTGTCGTTTAAGG

Secondary structure and sequence

TSD TIR

5'

3'

                T              A   T      ACACAAATTAAGAAAAACATTTAATTTTTTGTTTTACCTTTTATTAATATATTTTATAAAAAAATTCATTGGTTAAAACAT
TACTCCCTCCGTTTCG TTTAGTTGTCGTTT AGG TTTTTC                                                                                 
|||||||||||||||| |||||||||||||| ||| ||||||                                                                                  
ATGAGGGAGGCAAAGT AAATCAACAGCAAA TCC TAAATT                                                                                 
                C              A   -      TAAAACAAAGTATTATCAACAGCAAAATCCAAAAGTTACGTTTACAAACCACTTTTAAGGTCAAAATAGGGATGACAAAAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0210117

TACTCCCTCCGTTTCGTTTTAGTTGTCGTTTAAGGTTTTTTCACACAAATTAAGAAAAACATTTAATTTTTTGTTTTACCTTTTATTAATATATTTTATAAAAAAATTCATTGGTTAAAACATTAAAACAGTAGGGATAAAACTGGAATTTTCACCAAACATTTGCATTGAAAACCTAAAACGACAACTATTATGAAACAAAATTTAAATCCTAAAACGACAACTAAACTGAAACGGAGGGAGTA

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