SE0250119

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4636
  • Arabidopsis lyrata
  • SE0250119
  • PIF/harbinger
  • To23
  • scaffold_6:2949470-2949708
  • TAA
  • AGAGCAACCACAATGG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA         A      --      ATAAGTTTTGAGTTTCTTATATTTTAAATATTAATATTTTAATATAAAAATAAATAGACCACTAAAAAGAAGACAAATGTACAAAAGGTTTCTA
  AGAGCAACC CAATGG  TTAGAA                                                                                              
  ||||||||| ||||||  ||||||                                                                                              A
  TCTCGTTGG GTTACC  CAAAGA                                                                                              
AA         A      TC      ATGTTCTATGGAATTGTAATTTTATAAATTTTTTTAACTTTTTCTTCTCTCTCTTGTTCTTTGTATGGAATATATTCCTTACAAAGATTTGTAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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