SE0210120

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4637
  • Arabidopsis lyrata
  • SE0210120
  • Tc1/Mariner
  • St10
  • scaffold_1:28859453-28859683
  • TA
  • TACTCATTCTGTCCCATTTTATAAGATGTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
     A          TT     A       --------------     AAAAGCACAAAGATAAGAAATAATTAATGTTTACTTTTTTATAGGAATTCAGCCAAGAAAAAAAAAGACTGC
TACTC TTCTGTCCCA  TTATA GATGTTT              TGTGT                                                                        
||||| ||||||||||  ||||| |||||||              |||||                                                                        A
ATGAG GAGACAGGGT  AATAT CTACAAA              ACAAG                                                                        
     G          TT     C       ATCGTAAAAAAGGA     ATAAAATATTCTAAAAAAATCTAAAGATACGTATTAAATACAAATAAATCATACAATACTGGTAAATTTAAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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