SE0250124

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4641
  • Arabidopsis lyrata
  • SE0250124
  • PIF/harbinger
  • To28
  • scaffold_5:13179215-13179401
  • AAT
  • TGGCTGTGACTGGTG

Secondary structure and sequence

TSD    TIR
5'



3' 
AA   C G         TGCTACAT      AAAATATATCAC     CCTACCACATTGGAAGAAAAGTTTTTTTTGTTATCAAATGAATTTTTATTT
  TGG T TGACTGGTG        AGAAGA            GTGGT                                                   
  ||| | |||||||||        ||||||            |||||                                                    
  ACC A ACTGACCAC        TCTTCT            TCTTT                                                   
TA   C G         ----TCTC      -------CCTTT     ACTCTTCTTAAGAGAAAGATGATTATGCATCTTCTTTTCAAAGATGAGTAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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