Plant MITE

SE0250126

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4643
Arabidopsis lyrata
SE0250126
PIF/harbinger
To18
scaffold_3:1907795-1907994
TAA
AGAGCATGTTTACTCATGATTC

Secondary structure and sequence

TSD TIR

5'

3'

TA                   T  TTTT           CC     ATAATAATAAAAAATATATATTTTAGGTTGATATTTGAATGAAAAGTATCATTGG
  AGAGCATGTTTACTCATGA TC    GTGGGTATCAT  CATGA                                                       
  ||||||||||||||||||| ||    |||||||||||  |||||                                                       A
  TCTCGTACAAATGAGTACT GG    TACTCATAGTA  ATTGT                                                       
AA                   T  -TTT           --     CAAAAAATAATAACAAAGTACTCAACTTTGGGTTTTACTCATAGTTATCTGAGTG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0250126

TAAGAGCATGTTTACTCATGATTCTTTTGTGGGTATCATCCCATGAATAATAATAAAAAATATATATTTTAGGTTGATATTTGAATGAAAAGTATCATTGGAGTGAGTCTATTGATACTCATTTTGGGTTTCAACTCATGAAACAATAATAAAAAACTGTTAATGATACTCATTTTGGTTCATGAGTAAACATGCTCTAA

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