SE0250127

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4644
  • Arabidopsis lyrata
  • SE0250127
  • PIF/harbinger
  • To12
  • scaffold_8:12025734-12026107
  • TAA
  • AGGGGGGTGTATTGAAGAAAGAATTTGGAGTGATTTG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA             G  G    A               -AGTTTT     GT      A     TTGGTGAATTTTGATGAATTAGGGAATTTGATATCAAAACTCTCCCAAATCCCACCTAAAACCATGAGATTTGGATATTTGAATTTTTAACTAAGATGTTCTCTGAAATCCCACCAAAAATCA
  AGGGGGGTGTATT AA AAAG ATTTGGAGTGATTTG       AATGA  TTTGAG TGATT                                                                                                                           
  ||||||||||||| || |||| |||||||||||||||       |||||  |||||| |||||                                                                                                                           C
  TCCCCCCACATAA TT TTTC TAAACTTTACTAAAC       TTCTA  TTTAGG TACAA                                                                                                                           
AA             G  A    C               ATAATCT     --      A     TAAGTTTGTACTTAAAATTTTTAGAAAAATTTTAGTTCACAATAACCTAATCACTAAAATTTTAGATGTTAGTTTAGGTGACAATAACCTTTGTAAATTTCAACACCTAAACTTTACTGAACT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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