SE0250130

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4647
  • Arabidopsis lyrata
  • SE0250130
  • PIF/harbinger
  • To29
  • scaffold_6:23815955-23816309
  • TAA
  • AGGGGGTGTTATTGGTTTATTAATTTGTA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA      T             TA           CATATAGAATTTGAAAATTTCTATTAATTATGAAATCAAGATATATGGATTTTGAAATAACATGTGTTTACCCATGGATTTGAATCCTTCTATTTTTCTCTTTCAATTCCATTCAATTCCATTTAAAACATAATTTGGATTC
  AGGGGG GTTATTGGTTTAT  ATTTGTAAATC                                                                                                                                              
  |||||| |||||||||||||  |||||||||||                                                                                                                                              T
  TCCTCC CAATAACCAAGTA  TAAATATACCT                                                                                                                                              
AA      C             CC           TAATCTTTAGGTTTGTTTTTAGTAAACAATAAGTTAGTAACTAAAATTTTAGGATTAATTTAAGTACACAATAACCAAGATACTAAATATTTATGATCAATTTTAGTATACAATAAGCAAATCAGTAAACAAAAACCTAAAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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