SE0230131

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4648
  • Arabidopsis lyrata
  • SE0230131
  • hAT
  • Hat36
  • scaffold_1:6928484-6928757
  • TGTCGATA
  • TGTCGATACAGAGCCGGCCCTAGACACAAGCTGG

Secondary structure and sequence

TSD    TIR
5'



3' 
                  C T   CAC       T    -      CT  T GCCCCAAAAATATATAGTTCTTAATCGGCCTCATTTACATAAAAGTCTCTTTAGTCTAGTGGTTTAAAGATGTGAAAATATTACTAAG
TGTCGATACAGAGCCGGC C AGA   AAGCTGG GAGG CATGTG  TG G                                                                                        
|||||||||||||||||| | |||   ||||||| |||| ||||||  || |                                                                                        G
ATAGCTGTGTCTCGGCCG G TCT   TTTGACC CCGG GTTCGG  GT T                                                                                        
                  C T   --A       -    T      --  - ATATTACAAACCCGGCTTGATATAACATTTGTTTCCTTTTCTTTAATTTTGTCCATTTTACACAATGTCATTTCCAAGCTTGAACTCT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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