SE0230136

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4653
  • Arabidopsis lyrata
  • SE0230136
  • hAT
  • Hat16
  • scaffold_8:13410135-13410325
  • TTCATCGG
  • GGCAGGGCC

Secondary structure and sequence

TSD    TIR
5'



3' 
TTCATC         GTA    AGCACAGTCGGGTGAAACATTCGTGTTGGGCCCTCAAATTTTTAACGAGTAATATGTATAGATTTTGGGGCCCCC
      GGCAGGGCC   ACTG                                                                           
      |||||||||   ||||                                                                            
      TTGTCCCGG   CCGG                                                                           
GGCTAC         ---    GATGCTCAATACCTCGGTGTTTGTTAATGCCAAACCCCCAGAGTATTAGATATATATTTAAAAAAAAATGACAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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