SE0250139

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4656
  • Arabidopsis lyrata
  • SE0250139
  • PIF/harbinger
  • To22
  • scaffold_7:18632749-18632979
  • AAT
  • TGGGTCTGATTAGTAACCA

Secondary structure and sequence

TSD    TIR
5'



3' 
AA   G C   TTA    -   AA     TACAAGTTTTTTAGCTGTTAGCTGGAGCTGTAAGCTTTATCGGAATAGTGTAAAACTGTAATAAAGAGTTGTACAAAAAAGCTGTAC
  TGG T TGA   GTAA CCA  AGCTA                                                                                       
  ||| | |||   |||| |||  |||||                                                                                       A
  ACC A ACT   CATT GGT  ATAGT                                                                                       
TA   G A   TAC    A   -A     TTCGCCATGTCGCACATGTCGAAACTATCAATGGTTAGTGTTTTTGAAATAGTTTTCGCAATGATTGTCAAAATGAGAGTCGAAAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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