SE0230140

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4657
  • Arabidopsis lyrata
  • SE0230140
  • hAT
  • Hat23
  • scaffold_4:10672015-10672600
  • GCTTTAGC
  • GCTTTAGCCCTTGTTCAAAAA

Secondary structure and sequence

TSD    TIR
5'



3'
   TT                --C      AAG  G  -- --  TTTTGCGGCGGCTAGTCGCTCGGCGGCAAGGGACCGCCGGGATTATGGTCAAATCGGCTCAAAAATCGGAATTTTTCAAAAAACTTGATTTTTTGTTCTTTTGAAGGTTGAAATTCATAGTTCTTTGATGTATCTAGCATATATAGCAATAAACAATAGAAGAAAATAAAAAAAATGATAAAAAGTGAAGAAAAATTAAGTGACGGCCGAATTAGGGTTTACAGATCTCGTTTTTAAGATCTTGAAGACAAG
GCT  AGCCCTTGTTCAAAAA   GCGGCC   GC GC  C  GA                                                                                                                                                                                                                                                            
|||  ||||||||||||||||   ||||||   || ||  |  ||                                                                                                                                                                                                                                                            G
CGA  TCGGGAACAAGTTTTT   CGATCC   GC AT  G  CG                                                                                                                                                                                                                                                            
   TT                TAG      ---  A  CA CC  CAAGCTCGACCCGAATCGCGGATCGGCTTTTTAGCCTCTAATTTGCCCCTAATTAGCCCTAATCAAAATAAAATAAAAATGAATATATAACATATATATAATAATAACGCCTTGTTTTTAATTATTACGTTATACCAGGTCAACAATATTCGCACAATTGCAATAGGGTCCACGGCTCAAGCTCATCGGGGCGAGCGTAACTACGAACAAAACAAGTAAAATCCAAATTAACTATTATTTACTGGTTTTATG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End