SE0230144

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4661
  • Arabidopsis lyrata
  • SE0230144
  • hAT
  • Hat3
  • scaffold_2:3883977-3884241
  • AAGAGAGG
  • CAGGGCCGGCCCA

Secondary structure and sequence

TSD    TIR
5'



3' 
AAGAGAGG             -        GAAT  GTAAAGCCCAAGAATATTTTGTTACCCATTAATCAACAAAAATACAAAAAAATGTTAAAATTTCGTCTTAAAGTCACTCGAACTCGTCAAGTCCCGCTA
        CAGGGCCGGCCCA AAGGATTT    GC                                                                                                   
        ||||||||||||| ||||||||    ||                                                                                                    
        GTCCCGGCCGGGT TGGATTTC    GG                                                                                                   
GGAGAGAA             C        ----  GTAGTTCGTCCACGAAATCCGTAGTCTATTATAAAATTAAAAATTCCCCGTAGTTTAAAATCTATTCTAGAACATCATGTCACCAATTACAGAGTAAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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