SE0220149

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4666
  • Arabidopsis lyrata
  • SE0220149
  • Mutator
  • M4
  • scaffold_7:11735428-11735898
  • ATTTCTAAA
  • GGGAAAAATGTCATTTAAATCGTCAGTTTACC

Secondary structure and sequence

TSD    TIR
5'



3' 
ATTTCTAAAC                                ATTTTC           TC         A       TGATTTAAATCCTTAATTTTATGTTGATTTTCATTTTAATCATGAATTCTCATTGACAAAGCCAATTGAGGCATATTGCTAAATGGCTAAACGGATCAATAAGACGATGTCATCGCATTACTGACACTTCGAAGCCATCAAATAATTTTTCTTCTACATCA
          GGGAAAAATGTCATTTAAATCGTCAGTTTACC      GTTGGTTTAAA  ATGAACTCT GATCTGG                                                                                                                                                                 
          ||||||||||||||||||||||||||||||||      |||||||||||  ||||||||| |||||||                                                                                                                                                                  
          CCCTTTTTACAGTAAATTTAGTAGTCAAATGG      CAACCAAATTT  TACTTGAGA CCTGGAT                                                                                                                                                                 
CAAATCTTTA                                ------           CA         -       CACTAAATTTAGGAGTTAAAATACACCTGGACTACTAAATTTAGGAGTTAAAATACAACTGAAAGTTAAATTAATACTTAAGATCAACTGATTCGGTTAACTCCGTGTGGCAATTGACTGATTTGCCTTATTAGTCTGCTTCTCCTTCTACCTTTGGTACA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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