SE0230151

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4668
  • Arabidopsis lyrata
  • SE0230151
  • hAT
  • Hat26
  • scaffold_8:22036565-22036743
  • TTGGGCCC
  • GGGCCCCAGAGCCGGTCCGGAG

Secondary structure and sequence

TSD    TIR
5'



3' 
TT      --   A            GGCAAGCAA    A   ATCGCTTAGGGTCTCACATTATAAAATATTTTTTTTGGGAGAATTTTTTTT
  GGGCCC  CAG GCCGGTCCGGAG         GTGA GCC                                                   
  ||||||  ||| ||||||||||||         |||| |||                                                   T
  CCCGGG  GTC CGGCCAGGTTTC         TTTT AAA                                                   
        TT   C            -----AAAG    -   AGAAACTATGGGATGCGTATTGATTTTTAAATCCGGAAAAACAATTACATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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