SE0230153

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4670
  • Arabidopsis lyrata
  • SE0230153
  • hAT
  • Hat39
  • scaffold_6:839958-840160
  • TTTAGTGT
  • CAGTGGCGGA

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTAGTGT          TCTAGGAAAATT    GATGGTGTCAAACTTACAAATGAGTTGAGTTCTAATAATTGGGTTGGTTTCAAGCTTCATAATTAAACTGATA
        CAGTGGCGGA            GTTT                                                                         
        ||||||||||            ||||                                                                          
        GTCACCGCCT            CGTG                                                                         
TGTGATTT          -----------C    CAATTACTAACACCCACGTAAACTGTGGTAATTTTAAAATTTTTGCAAAATTAATGTAATTTTAAACTTATAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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