Plant MITE

SE0210154

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4671
Arabidopsis lyrata
SE0210154
Tc1/Mariner
St12
scaffold_1:32522732-32522953
TA
TACTTCCTCCGTTTCAAAATGTAAGACGTTTTG

Secondary structure and sequence

TSD TIR

5'

3'

          G                      AG    TATT    TTTC -   TGTAAGACGTTTTCAAGTTTCTATGCAAATTATATATTAATTTAATATTTTATGATTATT
TACTTCCTCC TTTCAAAATGTAAGACGTTTTG  GTAT    TTTG    A AAA                                                            
|||||||||| ||||||||||||||||||||||  ||||    ||||    | |||                                                             
ATGAGGGAGG AAAGTTTTATATTCTGCAAAAT  AATT    TTCG    T TGT                                                            
          A                      -C    ----    ---- G   CTAATTCTTTATAGATGAAAATTTTTCAAGTTGGTTAGTACTTACTCTGACGTATTATAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0210154

TACTTCCTCCGTTTCAAAATGTAAGACGTTTTGAGGTATTATTTTTGTTTCAAAATGTAAGACGTTTTCAAGTTTCTATGCAAATTATATATTAATTTAATATTTTATGATTATTTATATTATGCAGTCTCATTCATGATTGGTTGAACTTTTTAAAAGTAGATATTTCTTAATCTGTGTGCTTTTAACTAAAACGTCTTATATTTTGAAAAGGAGGGAGTA

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